PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.8HA7W
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 246aa    MW: 27934.6 Da    PI: 8.5978
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.8HA7WgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.75.2e-0785104120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C+k+F+r  nL+ H+
  Aradu.8HA7W  85 FSCPVCSKTFNRYNNLQMHM 104
                  89*****************9 PP

2zf-C2H216.42.6e-05169191123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y C +Cgk+F  k + ++H +++
  Aradu.8HA7W 169 YACRKCGKPFAVKGDWRTHEKNC 191
                  89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.78E-678107No hitNo description
Gene3DG3DSA:3.30.160.603.4E-685104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.03185107IPR015880Zinc finger, C2H2-like
PfamPF138946.6E-485107No hitNo description
PROSITE profilePS5015710.76285112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576671.71E-6153189No hitNo description
Gene3DG3DSA:3.30.160.601.5E-5155189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035563169189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.559169189IPR007087Zinc finger, C2H2
SMARTSM00355220195218IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MTDPHYSNLY ASSGSVSDNT SGIDDRQKKK KISSNTEEIV GEKDEVMSVV SEHQPLLLER  60
LNNNKTQFQY WIPTASQILI GPTQFSCPVC SKTFNRYNNL QMHMWGHGSQ YRKGPDSLKG  120
TQPTAMLRLP CFCCAPGCKH NIDHPRARPL KDFRTLQTHY KRKHGVKPYA CRKCGKPFAV  180
KGDWRTHEKN CGRIWYCLCG SDFKHKRSLK DHVKAFGHGH GAFGIDCMQE EDEAASEVEH  240
DGDCSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430DRQKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015936759.11e-179PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-115ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLV7AJX01e-132V7AJX0_PHAVU; Uncharacterized protein
STRINGGLYMA13G27371.11e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-116C2H2 family protein